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Biotechnology Information reference number prjna1237501
Reference Number Prjna1237501, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Article Title: Actively Expressed Intergenic Genes Generated by Transposable Element Insertions in Gossypium hirsutum Cotton
Article Snippet: The data presented in this study are openly available from the National Center for Biotechnology Information under reference numbers PRJNA713422 ( https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA713422 (accessed on 10 March 2021)), PRJNA1130147 ( https://dataview.ncbi.nlm.nih.gov/object/PRJNA1130147 (accessed on 1 July 2024)), and PRJNA1130001 ( https://dataview.ncbi.nlm.nih.gov/object/PRJNA1130001 (accessed on 30 June 2024)).

Article Title: Bacteria use exogenous peptidoglycan as a danger signal to trigger biofilm formation.
Article Snippet: The sequencing read files were imported into the software CLC Genomics Workbench v10.1.1 (Qiagen) and mapped to the V. cholerae reference genome (National Center for Biotechnology Information accession numbers, NC_002505.1 and NC_002506.1) using the ‘RNA-Seq Analysis’ function in the CLC software with standard parameters.

Article Title: Fmr1 exon 14 skipping in late embryonic development of the rat forebrain
Article Snippet: Nucleic acid sequences Nucleic acid and protein sequence accession numbers are Reference Sequences (RefSeq) retrieved at the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov/nucleotide, Bethesda, MD, USA).

Article Title: GJB2 c.35del variant up-regulates GJA1 gene expression and affects differentiation of human stem cells
Article Snippet: Nucleic acid Reference Sequences (RefSeq) accession numbers retrieved at the National Center for Biotechnology Information (NCBI), and oligonucleotide sequences are listed on Tables S1 and S2.

Article Title: Polymorphic variants involved in methylation regulation: a strategy to discover risk loci for pancreatic ductal adenocarcinoma.
Article Snippet: Chiara Corradi , Giulia Lencioni, Manuel Gentiluomo , Alessio Felici, Anna Latiano, Gediminas Kiudelis, Casper H J van Eijck, Katalin Marta, Rita T Lawlor, Francesca Tavano, Ugo Boggi, Frederike Dijk, Giulia Martina Cavestro, Roel C H Vermeulen, Thilo Hackert, Maria Chiara Petrone, Faik Güntac Uzunoğlu, Livia Archibugi, Jakob R Izbicki, Luca Morelli, Alessandro Zerbi, Stefano Landi, Hannah Stocker, Renata TalarWojnarowska, Gregorio Di Franco, Péter Hegyi, Cosimo Sperti, Silvia Carrara, Gabriele Capurso, Maria Gazouli , Hermann Brenner, Stefania Bunduc, Olivier Busch, Francesco Perri, Martin Oliverius, Péter Jeno Hegyi, Mara Goetz, Pasquale Scognamiglio, Andrea Mambrini, Paolo Giorgio Arcidiacono, Edita Kreivenaite, Juozas Kupcinskas, Tamas Hussein, Stefano Ermini, Anna Caterina Milanetto, Pavel Vodicka, Vytautas Kiudelis, Viktor Hlaváč, Pavel Soucek, George E Theodoropoulos, Daniela Basso, John P Neoptolemos, Mateus Nóbrega Aoki, Raffaele Pezzilli, Claudio Pasquali, Roger Chammas, Sabrina Gloria Giulia Testoni, Beatrice MohelnikovaDuchonova, Maurizio Lucchesi, Cosmeri Rizzato, Federico Canzian, Daniele Campa 1 Cancer genetics

Sequencing:

Article Title: Environmental <scp>DNA</scp> metabarcoding in the Cape Fold aquatic ecoregion: Opportunities and challenges for <scp>eDNA</scp> uptake in an endemism hotspot
Article Snippet: .. 12S reference sequence data are deposited in the National Center for Biotechnology Information (NCBI) Nucleotide Database (accession numbers: PP911621- PP911634). ..

Article Title: An SNW/SKI-INTERACTING PROTEIN influences endoreduplication and cell growth in Arabidopsis
Article Snippet: .. NCBI (National Center for Biotechnology Information) reference sequence numbers are indicated before the specie names. ..



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<t>CUBN</t> variants detected in this study along the cubilin protein. Novel variants are shown in black, and the reported variants are shown in blue. #Number of families detected. We detected 40 types of CUBN variants, 30 of which were novel. Eleven variants were detected in multiple families, and p.Cys1764Tyr and p.Ser1936Asn were detected in the largest number of 13 families.
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<t>CUBN</t> variants detected in this study along the cubilin protein. Novel variants are shown in black, and the reported variants are shown in blue. #Number of families detected. We detected 40 types of CUBN variants, 30 of which were novel. Eleven variants were detected in multiple families, and p.Cys1764Tyr and p.Ser1936Asn were detected in the largest number of 13 families.
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<t>CUBN</t> variants detected in this study along the cubilin protein. Novel variants are shown in black, and the reported variants are shown in blue. #Number of families detected. We detected 40 types of CUBN variants, 30 of which were novel. Eleven variants were detected in multiple families, and p.Cys1764Tyr and p.Ser1936Asn were detected in the largest number of 13 families.
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CUBN variants detected in this study along the cubilin protein. Novel variants are shown in black, and the reported variants are shown in blue. #Number of families detected. We detected 40 types of CUBN variants, 30 of which were novel. Eleven variants were detected in multiple families, and p.Cys1764Tyr and p.Ser1936Asn were detected in the largest number of 13 families.

Journal: Kidney International Reports

Article Title: Clinical and Genetic Insights Into Isolated Proteinuria With CUBN Variants

doi: 10.1016/j.ekir.2025.103754

Figure Lengend Snippet: CUBN variants detected in this study along the cubilin protein. Novel variants are shown in black, and the reported variants are shown in blue. #Number of families detected. We detected 40 types of CUBN variants, 30 of which were novel. Eleven variants were detected in multiple families, and p.Cys1764Tyr and p.Ser1936Asn were detected in the largest number of 13 families.

Article Snippet: The CUBN cDNA reference number is NM_001081.4 (NCBI for Biotechnology Information ID).

Techniques:

Schematic of CUBN transcript variants. (a) Schematic representation of the known full-length CUBN transcript. A stop codon was present in the terminal exon (exon 67). (b) Schematic representation of the alternative CUBN transcript variants. Alternative splicing generates the cryptic exon in intron 28 as a new terminal exon harboring a stop codon, leading to changes in the 3′-coding and 3′ UTR sequences. This splicing variant may encode a cubilin isoform with a truncated C-terminus.

Journal: Kidney International Reports

Article Title: Clinical and Genetic Insights Into Isolated Proteinuria With CUBN Variants

doi: 10.1016/j.ekir.2025.103754

Figure Lengend Snippet: Schematic of CUBN transcript variants. (a) Schematic representation of the known full-length CUBN transcript. A stop codon was present in the terminal exon (exon 67). (b) Schematic representation of the alternative CUBN transcript variants. Alternative splicing generates the cryptic exon in intron 28 as a new terminal exon harboring a stop codon, leading to changes in the 3′-coding and 3′ UTR sequences. This splicing variant may encode a cubilin isoform with a truncated C-terminus.

Article Snippet: The CUBN cDNA reference number is NM_001081.4 (NCBI for Biotechnology Information ID).

Techniques: Alternative Splicing, Variant Assay